Inhaltspezifische Aktionen

Personal Homepage of Dr. Oliver Schwengers


Dr. Jochen Bathke

Heinrich-Buff-Ring 58

Raum: 0228

Tel.: +49 (0)641 99 35-801 (Sekr.) 



2020-present Scientific assistant for Deep-iAMR at JLU Gießen, Germany
2014-2019 Scientific assistant for DZIF/TTU HAARBI at JLU Gießen, Germany
2012-2014 Scientific assistant for LOEWE SYNMIKRO at Bielefeld University, Germany
2012 M.Sc. - Genome Based Systems Biology, Faculty of Biology, Bielefeld University, Bielefeld, Germany
2009 B.Sc. - Biology, Faculty of Biology, Bielefeld University, Bielefeld, Germany
2005 School leaving examination (Abitur), Gymnasium Korschenbroich

Born in Mönchengladbach, Germany



Ren Y, Chakraborty T, Doijad S, Falgenhauer L, Falgenhauer J, Goesmann A, Schwengers O, Heider D (2022) Multi-label classification for multi-drug resistance prediction of Escherichia coli. Computational and structural biotechnology journal: 1264-1270, DOI:10.1016/j.csbj.2022.03.007

Dardić D, Böhringer N, Plaza A, Zubeil F, Pohl J, Sommer S, Padva L, Becker J, Patras MA, Bill M, Kurz M, Toti L, Görgens SW, Schuler SMM, Billion A, Schwengers O, Wohlfart P, Goesmann A, Tennagels N, Vilcinskas A, Hammann PE, Schäberle TF, Bauer A (2022) Antidiabetic profiling of veramycins, polyketides accessible by biosynthesis, chemical synthesis and precursor-directed modification. Organic Chemistry Frontiers, DOI:10.1039/D1QO01652K


Schwengers O, Jelonek L, Dieckmann MA, Beyvers S, Blom J, Goesmann A (2021) Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microbial genomics 7(11), DOI:10.1099/mgen.0.000685

Ren Y, Chakraborty T, Doijad S, Falgenhauer L, Falgenhauer J, Goesmann A, Hauschild A, Schwengers O, Heider D (2021) Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. Bioinformatics, DOI:10.1093/bioinformatics/btab681

Pulami D, Schauss T, Eisenberg T, Blom J, Schwengers O, Bender JK, Wilharm G, Kämpfer P, Glaeser SP (2021) Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions. Antonie van Leeuwenhoek 114(3): 235-251, DOI:10.1007/s10482-021-01517-7


Ayeni FA, Falgenhauer J, Schmiedel J, Schwengers O, Chakraborty T, Falgenhauer L (2020) Detection of blaCTX-M-27-encoding Escherichia coli ST206 in Nigerian poultry stocks. The Journal of antimicrobial chemotherapy, DOI:10.1093/jac/dkaa293

Schwengers O, Barth P, Falgenhauer L, Hain T, Chakraborty T, Goesmann A (2020) Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores. Microbial Genomics, DOI:10.1099/mgen.0.000398

Schwengers O, Hoek A, Fritzenwanker M, Falgenhauer L, Hain T, Chakraborty T, Goesmann A (2020) ASA³P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PLoS computational biology 16(3): e1007134, DOI:10.1371/journal.pcbi.1007134

Schwengers O, Hain T, Chakraborty T, Goesmann A (2020) ReferenceSeeker: rapid determination of appropriate reference genomes. Journal of Open Source Software 5(46): 1994, DOI:10.21105/joss.01994


Falgenhauer L, Schwengers O, Schmiedel J, Baars C, Lambrecht O, Heß S, Berendonk TU, Falgenhauer J, Chakraborty T, Imirzalioglu C (2019) Multidrug-Resistant and Clinically Relevant Gram-Negative Bacteria Are Present in German Surface Waters. Frontiers in microbiology: 2779, DOI:10.3389/fmicb.2019.02779

Falgenhauer J, Imirzalioglu C, Falgenhauer L, Yao Y, Hauri AM, Erath B, Schwengers O, Goesmann A, Seifert H, Chakraborty T, Doijad S (2019) Whole-Genome Sequences of Clinical Enterobacter bugandensis Isolates from Germany. Microbiology resource announcements 8(29), DOI:10.1128/MRA.00465-19


Perniss A, Schmidt N, Gurtner C, Dietert K, Schwengers O, Weigel M, Hempe J, Ewers C, Pfeil U, Gärtner U, Gruber AD, Hain T, Kummer W (2018) Bordetella pseudohinzii targets cilia and impairs tracheal cilia-driven transport in naturally acquired infection in mice. Scientific reports 8(1): 5681, DOI:10.1038/s41598-018-23830-4

Falgenhauer L, Imirzalioglu C, Oppong K, Akenten CW, Hogan B, Krumkamp R, Poppert S, Levermann V, Schwengers O, Sarpong N, Owusu-Dabo E, May J, Eibach D (2018) Detection and Characterization of ESBL-Producing Escherichia coli From Humans and Poultry in Ghana. Frontiers in microbiology: 3358, DOI:10.3389/fmicb.2018.03358


Yu J, Blom J, Glaeser SP, Jaenicke S, Juhre T, Rupp O, Schwengers O, Spänig S, Goesmann A (2017) A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies. Journal of biotechnology: 2-9, DOI:10.1016/j.jbiotec.2017.07.010

Pappesch R, Warnke P, Mikkat S, Normann J, Wisniewska-Kucper A, Huschka F, Wittmann M, Khani A, Schwengers O, Oehmcke-Hecht S, Hain T, Kreikemeyer B, Patenge N (2017) The Regulatory Small RNA MarS Supports Virulence of Streptococcus pyogenes. Scientific reports 7(1): 12241, DOI:10.1038/s41598-017-12507-z


Hilker R, Stadermann KB, Schwengers O, Anisiforov E, Jaenicke S, Weisshaar B, Zimmermann T, Goesmann A (2016) ReadXplorer 2-detailed read mapping analysis and visualization from one single source. Bioinformatics 32(24): 3702-3708, DOI:10.1093/bioinformatics/btw541