Publications

Publications

2022

Kupschus J, Janssen S, Hoek A, Kuska J, Rathjens J, Sonntag C, Ickstadt K, Budzinski L, Chang H-D, Rossi A, Esser C, Hochrath K, 2022. Rapid detection and online analysis of microbial changes through flow cytometry. Cytometry Part A, DOI: 10.1002/cyto.a.24704

2021

Mahmoud W, Perniss A, Poharkar K, Soultanova A, Pfeil U, Hoek A, Bhushan S, Hain T, Gärtner U, Kummer W, 2021. CXCL13 is expressed in a subpopulation of neuroendocrine cells in the murine trachea and lung Cell Tissue Res. DOI: 10.1007/s00441-021-03552-2

Hoek A, Maibach K, Özmen E, Vazquez-Armendariz AI, Mengel JP, Hain T, Herold S, Goesmann A, 2021. WASP: a versatile, web-accessible single cell RNA-Seq processing platform. BMC Genomics. DOI: 10.1186/s12864-021-07469-6

2020

Vazquez-Armendariz AI, Heiner M, El Agha E, Salwig I, Hoek A, Hessler MC, Shalashova I, Shrestha A, Carraro G, Mengel JP, Günther A, Morty RE, Vadász I, Schwemmle M, Kummer W, Hain T, Goesmann A, Bellusci S, Seeger W, Braun T, Herold S, 2020. Multilineage murine stem cells generate complex organoids to model distal lung development and disease. EMBO J. DOI: 10.15252/embj.2019103476

Schwengers O, Hoek A, Fritzenwanker M, Falgenhauer L, Hain T, Chakraborty T, Goesmann A, 2020. ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PLoS Comput Biol DOI: 10.1371/journal.pcbi.1007134