References
2023
Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis.
Time-Informed Dimensionality Reduction for Longitudinal Microbiome Studies. Exploring the frequency and distribution of ecological non-monotonicity in associations among ecosystem constituents.
Proglacial slopes are protected against erosion by trait diverse and dense plant communities associated with specific microbial communities. Sequence-structure-function relationships in the microbial protein universe. Cytokine hyperresponsiveness in Children with ETV6::RUNX1-positive Acute Lymphoblastic Leukemia (ALL) after Challenge with Common Pathogens. Rapid detection and online analysis of microbial changes through flow cytometry. Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions. The microbiome in childhood acute lymphoblastic leukemia. Results from a pilot study on the Oral Microbiome in Children and Adolescents with Chronic non-Bacterial Osteomyelitis. Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing. Insights into the genome and secretome of Fusarium metavorans DSM105788 by cultivation on agro-residual biomass and synthetic nutrient sources. EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. WASP: a versatile, web-accessible single cell RNA-Seq processing platform. Vitamin D metabolites and the gut microbiome in older men. An intact gut microbiome protects genetically predisposed mice against leukemia. Microbiome analyses of blood and tissues suggest cancer diagnostic approach. The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months. A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice. Infectious stimuli promote malignant B-cell acute lymphoblastic leukemia in the absence of AID. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. The impact of skin care products on skin chemistry and microbiome dynamics. Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. Assessing taxonomic metagenome profilers with OPAL. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Qiita: rapid, web-enabled microbiome meta-analysis. American gut: an open platform for citizen science microbiome research. Phylogenetic placement of exact amplicon sequences improves associations with clinical information. KatharoSeq enables high-throughput microbiome analysis from low-biomass samples. Creating a 3D microbial and chemical snapshot of a human habitat. A communal catalogue reveals Earth’s multiscale microbial diversity. Critical assessment of metagenome interpretation—a benchmark of metagenomics software. Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson’s disease. Ambivalent covariance models. The RNA shapes studio. Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure. Abstract Shape Analysis of RNA. Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis. Can Probabilistic Model Checking Explore Ribo-Nucleic Acid Folding Space? Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. Bellman's GAP: a declarative language for dynamic programming. Investigating the RFAM paradox: The pseudoknot explanation. Prediction of RNA secondary structure including kissing hairpin motifs. A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. Faster computation of exact RNA shape probabilities. Browsing rna structures by interactive sonification. Shape based indexing for faster search of RNA family databases.
K Siems, K Runzheimer, K Rebrošova, L Etzbach, A Auerhammer, A Rehm, O Schwengers, M Šiler, O Samek, F Růžička and R Moeller
P Shi, C Martino, R Han, S Janssen, G Buck, M Serrano, K Owzar, R Knight, L Shenhav, AR Zhang
bioRxiv
M Hanusch, X He, S Janssen, J Selke, W Trutschnig, R Junker
Ecosystems, 2023
LM Ohler, S Haselberger, S Janssen, JC Otto, S Kraushaar, RR Junker
Basic and Applied Ecology, 2023 (71), 57-71
J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, T Vatanen, BC Taylor, C Chandler, S Janssen, N Carriero, A Pataki, N Carriero, I Fisk, RJ Xavier, R Knight, R Bonneau, T Kosciolek
Nature communications, 20232022
N Rüchel N, M Oldenburg, S Janssen, A Pandyra, W Liu, E Vasileiou, D Hein, VH Jepsen, U Fischer, D Picard, G Kögler, J Hauer, F Auer, A Beer, O Adams, C MacKenzie, M Jaeger, MG Netea, A Borkhardt, KL Gössling
HemaSphere 2023, 7(2)
J Kupschus, S Janssen, A Hoek, J Kuska, J Rathjens, C Sonntag, K Ickstadt, L Budzinski, HD Chang, A Rossi, C Esser, K Hochrath
Cytometry Part A, 2022
K Siems, K Runzheimer, A Rehm, O Schwengers, D Heidler Von Heilborn, L Kaser, F Arndt, C Neidhöfer, JP Mengel, M Parcina, A Lipski, T Hain, R Moeller
Frontiers in Microbiology, section Extreme Microbiology, accepted2021
M Oldenburg, N Rüchel, S Janssen, A Borkhardt, KL Gössling
Cancers (Basel) 2021, 13(19), 4947
M Zeus, S Janssen, HJ Laws, U Fischer, A Borkhardt, PT Oommen
Zeitschrift für Rheumatologie, 2021
N Apostolopoulos, SP Glaeser, R Bagwe, S Janssen, U Mayer, C Ewers, P Kämpfer, R Neiger, N Thom
PLoSONE, 2021
SC Brandt, H Brognaro, A Ali, B Ellinger, K Maibach, M Rühl, C Wrenger, H Schlüter, W Schäfer, C Betzel, S Janssen and M Gand
Biotechnology for Biofuels, 2021
K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, A Gonzalez, S Janssen, M Estaki, N Haiminen, KL Beck, Q Zhu, E Sayyari, JT Morton, A Tripathi, JM Gauglitz, C Marotz, NL Matteson, C Martino, JG Sanders, AP Carrieri, SJ Song, AD Swafford, P Dorrestein, KG Andersen, L Parida, HC Kim, Y Vázquez-Baeza, R Knight
mSystems, 2021
A Hoek, K Maibach, E Özmen, AI Vazquez-Armendariz, JP Mengel, T Hain, S Herold, A Goesmann
BMC Genomics, 20212020
RL Thomas, L Jiang, JS Adams, ZZ Xu, J Shen, S Janssen, G Ackermann, D Vanderschueren, S Pauwels, R Knight, ES Orwoll, DM Kado
Nature Communications 5997, 2020
C Vicente Dueñas, S Janssen, M Oldenburg, F Auer, I González Herrero, A Casado-García, M Isidro-Hernández, J Raboso-Gallego, P Westhoff, A Pandyra, D Hein, K Gössling, D Alonso-López, J De Las Rivas, S Bhatia, F Garcia-Criado, M Begoña García Cenador, A Weber, K Köhrer, J Hauer, U Fischer, I Sanchez-Garcia, A Borkhardt
Blood 136:18, 2020
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, T Kosciolek, S Janssen, J Metcalf, SJ Song, J Kanbar, S Miller-Montgomery, R Heaton, R Mckay, SP Patel, AD Swafford, R Knight
Nature, 2020
MI Ordiz, S Janssen, G Humphrey, G Ackermann, K Stephenson, S Agapova, O Divala, Y Kaimila, K Maleta, C Zhong, R Knight, I Trehan, PI Tarr, B Rusconi, MJ Manary
The American Journal of Clinical Nutrition, 2020
TR Sampson, C Challis, N Jain, A Moiseyenko, MS Ladinsky, GG Shastri, T Thron, BD Needham, I Horvath, JW Debelius, S Janssen, ...
eLife, 9:e53111, Feb 20202019
G Rodríguez-Hernández, FV Opitz, P Delgado, C Walter, ÁF Álvarez-Prado, I González-Herrero, F Auer, U Fischer, S Janssen, ...
Nature Communications 5563, 2019
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, P Belda-Ferre, GA Al-Ghalith, E Kopylova, ...
Nature Communications 5477 (10) 2019
A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ...
BMC biology 17 (1), 47 2019
N Iszatt, S Janssen, V Lenters, C Dahl, H Stigum, R Knight, S Mandal, ...
Microbiome 7 (1), 34 2019
F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki
Genome biology 20 (1), 51 2019
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857 20192018
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, Y Vázquez-Baeza, G Ackermann, J DeReus, S Janssen...
Nature methods 15 (10), 796 2018
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
mSystems 3 (3), e00031-18 2018
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
Msystems 3 (3), e00021-18 2018
JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ...
MSystems 3 (3), e00218-17 2018
CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ...
Scientific reports 8 (1), 3669 20182017
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457 2017
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063 20172016
TR Sampson, JW Debelius, T Thron, S Janssen, GG Shastri, ZE Ilhan, ...
Cell 167 (6), 1469-1480. e12 20162015
S Janssen, R Giegerich
BMC Bioinformatics 16 (1), 178 2015
S Janssen, R Giegerich
Bioinformatics 31 (3), 423-425 20152014
S Janssen
Universitätsbibliothek Bielefeld 2014
S Janssen, R Giegerich
RNA Sequence, Structure, and Function: Computational and Bioinformatic … 20142013
G Sauthoff, M Möhl, S Janssen, R Giegerich
Bioinformatics 29 (5), 551-560 20132012
S Janssen, L Paulevé, Y Ponty, B Raman, M Zytnicki
Platinum Sponsor, 38 20122011
S Janssen, C Schudoma, G Steger, R Giegerich
BMC bioinformatics 12 (1), 429 2011
G Sauthoff, S Janssen, R Giegerich
Proceedings of the 13th international ACM SIGPLAN symposium on Principles … 2011
S Janssen, Y Ponty, B Raman, S Sheikh, JM Steyaert, P Clote
Fifth Indo-French Bioinformatics Meeting 20112010
C Theis, S Janssen, R Giegerich
International Workshop on Algorithms in Bioinformatics, 52-64 2010
JP Schlüter, J Reinkensmeier, S Daschkey, E Evguenieva-Hackenberg, S Janssen...
BMC genomics 11 (1), 245 2010
S Janssen, R Giegerich
Bioinformatics 26 (5), 632-639 23 2010
F Grond, S Janssen, S Schirmer, T Hermann
Proceedings of the 3rd Interactive Sonification Workshop 20102008
S Janssen, J Reeder, R Giegerich
BMC bioinformatics 9 (1), 131 2008
Suggested affiliation for future publications:
Algorithmic Bioinformatics, Justus Liebig University Giessen, Germany