Agenda of Summer School
Arrival day for the Summer School will be Sunday, June 25th. Departure is on Saturday, July 1st.
Each day will start with a keynote lecture at 9 a.m. as an introduction to the topic of the day followed by a presentation by a de.NBI representative. Participants are encouraged to bring their own tools to be used for practical exercises and hands-on training during the afternoon sessions.
| Monday | Tuesday | Wednesday | Thursday | Friday | |
|---|---|---|---|---|---|
| TOPIC | Cloud Computing Basics | Advanced Cloud Computing | Security Aspects | Containerization in the Cloud | Orchestration of Cloud based services |
| 9:00 - 10:15 | Welcome & Introduction | Delivering ICT Infrastructure for biomedical Research |
A hybrid journey - The first steps of EMBL-EBI in the cloud world |
Christophe Blanchet: Biosphere - French Infrastructure for Multi-Cloud Deployment of Bioinformatics Applications |
Francois Jeanmougin: Cloud computing in life sciences simulations, an HPE ecosystem Marius Dieckmann: A short introduction to Hadoop |
| 10:15 - 10:45 | Coffee Break | ||||
| 10:45 - 12:00 | Cloud computing - General terms and concepts |
Introduction to automated infrastructure management with Ansible |
Patrick Münch: Hardening framework dev-sec.io (incl. hands-on) |
Max Hanussek: Containerized mass spectra prediction with UNICORE workflows using an OpenStack cloud environment |
Cloud computing for large-scale metagenome analyses |
| 12:00 - 13:00 | Lunch Break | ||||
| 13:00 - 14:30 |
A practical introduction to OpenStack |
Ansible Hands-On - Playbooks, Plays & Roles |
Patrick Münch: Automated infrastructure testing with InSpec (incl. hands-on) |
Scalable microbial genome analysis with ASAP |
Introduction to BiBiGrid |
| 14:30 - 15:00 | Coffee Break | ||||
| 15:00 - 16:00 | Christian Keil: OpenStack & Storage - Best friends for forced Marriage |
Dynamic Ansible & Orchestration (Hands-On) |
Reproducible bioinformatics analyses with BioContainers |
PhenoMeNal - A Cloud e-infrastructure for metabolomics data analysis |
Jia Yu: Cloud computing with Hadoop and Spark in Bioinformatics |
| 16:00 - 17:00 | Large-scale cancer genomics analysis in the Cloud - workflows and systems |
Liren Huang: Analysis of NGS data on the Cloud with SparkHit |
|||
| 17:00 - 20:00 | Poster Session / Beer & Brezel | Guided tour and reception at Mathematikum | Visit to Gleiberg Castle & Summer School Dinner | ||
| Funding: | |
|---|---|
| The de.NBI project is funded by the BMBF. FKZ 031A532 — 031A540 |
 |