Publications
since 2002
2023
Symbiont-host interactome mapping reveals effector-targeted modulation of hormone networks and activation of growth promotion. Osborne, R., Rehneke, L., Lehmann, S. ... Schäfer, P. et al.; Nat Commun 14, 4065 (2023).
doi.org/10.1038/s41467-023-39885-5
Rhizobial nitrogen fixation efficiency shapes endosphere bacterial communities and Medicago truncatula host growth. Lagunas, B., Richards, L., Sergaki, C. ... Schäfer, P. et al.; Microbiome 11, 146 (2023).
https://doi.org/10.1186/s40168-023-01592-0
2022
Epigenetic priming of immune/inflammatory pathways activation and abnormal activity of cell cycle pathway in a perinatal model of white matter injury.
AL Schang, J Van Steenwinckel, ZS Ioannidou, J Lipecki, C Rich-Griffin, K Woolley-Allen, N Dyer, T Le Charpentier, P Schäfer, B Fleiss, S Ott, D Sabéran-Djoneidi, V Mezger, P Gressens;
Cell Death & Disease 13 (12), 1-19, 2022.
https://doi.org/10.1038/s41419-022-05483-4
Development specifies, diversifies and empowers root immunity.
S Üstüner, P Schäfer, R Eichmann;
EMBO reports 23 (12), e55631, 2022.
https://doi.org/10.15252/embr.202255631
Polyclonal Aptamer Libraries from a FluRoot-SELEX for the Specific Labeling of the Apical and Elongation/Differentiation Zones of Arabidopsis thaliana Roots.
AK Kissmann, D Wolf, M Krämer, F Müller, V Amann, H Xing, KE Gottschalk, T Weil, R Eichmann, P Schäfer, F Rosenau;
International Journal of Molecular Sciences 23 (20), 12220, 2022.
https://doi.org/10.3390/ijms232012220
A mitochondrial RNA processing protein mediates plant immunity to a broad spectrum of pathogens by modulating the mitochondrial oxidative burst.
Y Yang, Y Zhao, Y Zhang, L Niu, W Li, W Lu, J Li, P Schäfer, Y Meng, W Shan;
The Plant Cell 34 (6), 2343-2363, 2022.
https://doi.org/10.1093/plcell/koac082
2021
Comparative Genomics across Three Ensifer Species Using a New Complete Genome Sequence of the Medicago Symbiont Sinorhizobium (Ensifer) meliloti WSM1022.
L Baxter, P Roy, E Picot, J Watts, A Jones, H Wilkinson, P Schäfer, M Gifford, B Lagunas;
Microorganisms 9 (12), 2428, 2021.
https://doi.org/10.3390/microorganisms9122428
microRNAs-Game-changers in plant symbioses.
P Schäfer;
Journal of Plant Physiology 263, 153459-153459, 2021.
https://doi.org/10.1016/j.jplph.2021.153459 PMID: 34198125
Mediator Subunits MED16, MED14, and MED2 Are Required for Activation of ABRE-Dependent Transcription in Arabidopsis.
M Lee, A Dominguez-Ferreras, E Kaliyadasa, WJ Huang, E Antony, T Stevenson, S Lehmann, P Schäfer, MR Knight, V Ntoukakis, H Knight;
Frontiers in plant science 12, 649720, 2021.
https://doi.org/10.3389/fpls.2021.649720
Hormones as go‐betweens in plant microbiome assembly.
R Eichmann, L Richards, P Schäfer;
The Plant Journal 105 (2), 518–541, 2021.
https://doi.org/10.1111/tpj.15135
2020
Regulation of cell type-specific immunity networks in Arabidopsis roots.
C Rich-Griffin, R Eichmann, MU Reitz, S Hermann, K Woolley-Allen, PE Brown, K Wiwatdirekkul, E Esteban, A Pasha, KH Kogel, NJ Provart, S Ott, P Schäfer;
Plant Cell 32 (9), 2742-2762, 2020.
https://doi.org/10.1105/tpc.20.00154
Novel markers for high-throughput protoplast-based analyses of phytohormone signaling.
S Lehmann, A Dominguez-Ferreras, WJ Huang, K Denby, V Ntoukakis, P Schäfer;
Plos one 15 (6), e0234154, 2020.
https://doi.org/10.1371/journal.pone.0234154
Single-cell transcriptomics: a high-resolution avenue for plant functional genomics.
C Rich-Griffin, A Stechemesser, J Finch, E Lucas, S Ott, P Schäfer;
Trends in plant science 25 (2), 186-197, 2020.
https://doi.org/10.1016/j.tplants.2019.10.008
2019
Negative regulators of plant immunity derived from cinnamyl alcohol dehydrogenases are targeted by multiple Phytophthora Avr3a‐like effectors.
T Li, Q Wang, R Feng, L Li, L Ding, G Fan, W Li, Y Du, M Zhang, G Huang, P Schäfer, Y Meng, BM Tyler, W Shan;
New Phytologist, 2019.
https://doi.org/10.1111/nph.16139
flg22-induced root growth-immunity trade-offs can be overcome by de-repression of cell cycle arrest. R Eichmann, J Finch, P Schafer; 2019 IS-MPMI XVIII Congress, 2019.
The evolution of effectome-based strategies to establish beneficial symbiosis. R Osborne, S Lehmann, J Roberts, T Nussbaumer, P Falter-Braun, P Schäfer; 2019 IS-MPMI XVIII Congress, 2019.
Regulation of resource partitioning coordinates nitrogen and rhizobia responses and autoregulation of nodulation in Medicago truncatula.
B Lagunas, M Achom, R Bonyadi-Pour, AJ Pardal, BL Richmond, C Sergaki, S Vázquez, P Schäfer, S Ott, J Hammond, ML Gifford;
Molecular plant 12 (6), 833-846, 2019.
https://doi.org/10.1016/j.molp.2019.03.014
2018
The tetrazole analogue of the auxin indole-3-acetic acid binds preferentially to TIR1 and not AFB5.
M Quareshy, J Prusinska, M Kieffer, K Fukui, AJ Pardal, S Lehmann, P Schafer, CI Del Genio, S Kepinski, K Hayashi, A Marsh, RM Napier;
ACS Chemical Biology 13 (9), 2585-2594, 2018.
https://doi.org/10.1021/acschembio.8b00527
Challenges and approaches in microbiome research: from fundamental to applied.
C Sergaki, B Lagunas, I Lidbury, ML Gifford, P Schäfer;
Frontiers in plant science 9, 1205, 2018.
https://doi.org/10.3389/fpls.2018.01205
Impact of spatial organization on a novel auxotrophic interaction among soil microbes.
X Jiang, C Zerfaß, S Feng, R Eichmann, M Asally, P Schäfer, OS Soyer;
The ISME journal 12 (6), 1443-1456, 2018.
https://doi.org/10.1038/s41396-018-0095-z
2017
The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens.
J Acevedo-Garcia, K Gruner, A Reinstädler, A Kemen, E Kemen, L Cao, FLW Takken, MU Reitz, P Schäfer, RJ O’Connell, S Kusch, H Kuhn, R Panstruga
; Scientific Reports 7 (1), 1-15, 2017.
https://doi.org/10.1038/s41598-017-07188-7
2016
Plant root-microbe communication in shaping root microbiomes.
A Lareen, F Burton, P Schäfer;
Plant molecular biology 90 (6), 575-587, 2016.
https://doi.org/10.1007/s11103-015-0417-8
2015
Standards for plant synthetic biology: a common syntax for exchange of DNA parts
NJ Patron, D Orzaez, S Marillonnet, H Warzecha, C Matthewman, ... P Schäfer … et al.;
New Phytologist 208 (1), 13-19, 2015.
https://doi.org/10.1111/nph.13532
Growth versus immunity—a redirection of the cell cycle?
R Eichmann, P Schäfer;
Current opinion in plant biology 26, 106-112, 2015.
https://doi.org/10.1016/j.pbi.2015.06.006
Hormone activities and the cell cycle machinery in immunity-triggered growth inhibition.
MU Reitz, ML Gifford, P Schäfer;
Journal of Experimental Botany 66 (8), 2187-2197, 2015.
https://doi.org/10.1093/jxb/erv106
Housing helpful invaders: the evolutionary and molecular architecture underlying plant root-mutualist microbe interactions.
B Lagunas, P Schäfer, ML Gifford;
Journal of Experimental Botany 66 (8), 2177-2186, 2015.
https://doi.org/10.1093/jxb/erv038
2014
Reprogramming of plant cells by filamentous plant‐colonizing microbes.
G Doehlemann, N Requena, P Schaefer, F Brunner, R O'Connell, JE Parker;
New Phytologist 204 (4), 803-814, 2014.
https://doi.org/10.1111/nph.12938
Endoplasmic reticulum—shape and function in stress translation.
F Brandizzi, L Frigerio, SH Howell, P Schäfer;
Frontiers in plant science 5, 425, 2014.
https://doi.org/10.3389/fpls.2014.00425
2013
New insights into the subcellular localization of Tubby-like proteins and their participation in the Arabidopsis-Piriformospora indica interaction.
M Reitz, S Pai, J Imani, P Schäfer;
Plant signaling & behavior 8 (8), e25198, 2013.
https://doi.org/10.4161/psb.25198
Root-Based Innate Immunity and Its Suppression by the Mutualistic Fungus Piriformospora indica.
S Jacobs, KH Kogel, P Schäfer;
Piriformospora indica, 223-237, 2013.
https://doi.org/10.1007/978-3-642-33802-1_13
2012
Ethylene in mutualistic symbioses.
B Khatabi, P Schäfer;
Plant signaling & behavior 7 (12), 1634-1638, 2012.
https://doi.org/10.4161/psb.22471
The Subcellular Localization of Tubby-Like Proteins and Participation in Stress Signaling and Root Colonization by the Mutualist Piriformospora indica.
MU Reitz, JK Bissue, K Zocher, A Attard, R Hückelhoven, K Becker, J Imani, R Eichmann, P Schäfer;
Plant physiology 160 (1), 349-364, 2012.
https://doi.org/10.1104/pp.112.201319
The endoplasmic reticulum in plant immunity and cell death.
R Eichmann, P Schäfer;
Frontiers in plant science 3, 200, 2012.
https://doi.org/10.3389/fpls.2012.00200
Piriformospora indica—a mutualistic basidiomycete with an exceptionally large plant host range.
X Qiang, M Weiss, KH Kogel, P Schäfer;
Molecular plant pathology 13 (5), 508-518, 2012.
https://doi.org/10.1111/j.1364-3703.2011.00764.x
Ethylene supports colonization of plant roots by the mutualistic fungus Piriformospora indica.
B Khatabi, A Molitor, C Lindermayr, S Pfiffi, J Durner, D Von Wettstein, KH Kogel, P Schäfer;
PLoS One 7 (4), e35502, 2012.
https://doi.org/10.1371/journal.pone.0035502
The Mutualistic Fungus Piriformospora indica Colonizes Arabidopsis Roots by Inducing an Endoplasmic Reticulum Stress–Triggered Caspase-Dependent Cell Death.
X Qiang, B Zechmann, MU Reitz, KH Kogel, P Schäfer;
The Plant Cell 24 (2), 794-809, 2012.
https://doi.org/10.1105/tpc.111.093260
The Subcellular Localization of Tubby-Like Proteins and Participation in Stress Signaling and Root Colonization by.
MU Reitz, JK Bissue, K Zocher, A Attard, R Hückelhoven, K Becker, J Imani, R Eichmann, P Schäfer;
Plant Physiology, 160, 349–364, 2012.
https://doi.org/10.1104/pp.112.201319
2011
STARTS–A stable root transformation system for rapid functional analyses of proteins of the monocot model plant barley.
J Imani, L Li, P Schaefer, KH Kogel;
The Plant Journal 67 (4), 726-735, 2011.
https://doi.org/10.1111/j.1365-313X.2011.04620.x
Broad-Spectrum Suppression of Innate Immunity Is Required for Colonization of Arabidopsis Roots by the Fungus Piriformospora indica.
S Jacobs, B Zechmann, A Molitor, M Trujillo, E Petutschnig, V Lipka, KH Kogel, P Schäfer;
Plant physiology 156 (2), 726-740, 2011.
https://doi.org/10.1104/pp.111.176446
2010
Transcriptome and metabolome profiling of field-grown transgenic barley lack induced differences but show cultivar-specific variances.
KH Kogel, LM Voll, P Schäfer, C Jansen, Y Wu, G Langen, J Imani, J Hofmann, A Schmiedl, S Sonnewald, D von Wettstein, RJ Cook, U Sonnewald;
Proceedings of the National Academy of Sciences 107 (14), 6198-6203, 2010.
https://doi.org/10.1073/pnas.1001945107
Interaction at a dark site-the efficiency of the mutualistic fungus Piriformospora indica in plant root colonization. P Schäfer; Julius-Kühn-Archiv, 428, 65, 2010.
Root transformation for genetic analysis of physiology of barley roots and its stress behaviour. J Imani, L Li, KH Kogel, P Schäfer; Julius-Kühn-Archiv, 428, 202, 2010.
Molecular mechanisms of the colonization of plant roots by the mutualistic fungus Piriformospora indica and other mycorrhizal fungi. P Schäfer, Habil., 2010.
2009
Manipulation of plant innate immunity and gibberellin as factor of compatibility in the mutualistic association of barley roots with Piriformospora indica.
P Schäfer, S Pfiffi, LM Voll, D Zajic, PM Chandler, F Waller, U Scholz, J Pons‐Kühnemann, S Sonnewald, U Sonnewald, KH Kogel;
The Plant Journal 59 (3), 461-474, 2009.
https://doi.org/10.1111/j.1365-313X.2009.03887.x
Phytohormones in plant root-Piriformospora indica mutualism.
P Schäfer, S Pfiffi, LM Voll, D Zajic, PM Chandler, F Waller, U Scholz, J Pons-Kühnemann, S Sonnewald, U Sonnewald, KH Kogel;
Plant signaling & behavior 4 (7), 669-671, 2009.
https://doi.org/10.4161/psb.4.7.9038
Comparative analysis of barley roots challenged with two Basidimycete fungi: pathogenic Rhizoctonia solani AG-8 and symbiotic Piriformospora indica.
J Fodor, BD Harrach, L Kiraly, B Barna, KH Kogel, P Schafer
Acta Physiologiae Plantarum 31 (1 Suppl.), 2009.
Manipulation of plant innate immunity and gibberellin as factor in the mutualistic association of barley roots with Piriformospora indica.
P Schafer, S Pfiffi, LM Voll, D Zajic, PM Chandler, F Waller, U Scholz, J Pons-Kuhnemann, S Sonnewald, U Sonnewald, KH Kogel;
The Plant Journal 59: 461-474, 2009.
http://hdl.handle.net/102.100.100/113386?index=1
The Sebacinoid Fungus Piriformospora indica: an Orchid Mycorrhiza Which May Increase Host Plant Reproduction and Fitness.
P Schäfer, KH Kogel;
Plant relationships, 99-112, 2009.
The Mycota, Vol. 5, Plant Relationships. H.B. Deising and K. Esser. eds. Springer-Verlag, Heidelberg.
https://doi.org/10.1007/978-3-540-87407-2_5
2008
Detection and identification of bacteria intimately associated with fungi of the order Sebacinales.
M Sharma, M Schmid, M Rothballer, G Hause, A Zuccaro, J Imani, P Kämpfer, E Domann, P Schäfer, A Hartmann, KH Kogel;
Cellular microbiology 10 (11), 2235-2246, 2008.
https://doi.org/10.1111/j.1462-5822.2008.01202.x
Salt tolerance of barley induced by the root endophyte Piriformospora indica is associated with a strong increase in antioxidants.
H Baltruschat, J Fodor, BD Harrach, E Niemczyk, B Barna, G Gullner, A Janeczko, KH Kogel, P Schäfer, I Schwarczinger, A Zuccaro, A Skoczowski;
New Phytologist 180 (2), 501-510, 2008.
https://doi.org/10.1111/j.1469-8137.2008.02583.x
Report on the Annual Meeting of the Working Croup 'Host-Parasite Interactions'. U Conrath, C Hoefle, H Schultheiss, R Eichmann, M Frank, R Hueckelhoven... Patrick Schäfer, Stefanie Pfiffi, Sophia Sonnewald, Frank Waller, Jörn Pons-Kühnemann, Uwe Sonnewald, Karl-Heinz Kogel… et al.;
Journal of Plant Diseases and Protection 115 (3), 139-143, 2008.
http://www.jstor.org/stable/43228983
Interactive signal transfer between host and pathogen during successful infection of barley leaves by Blumeria graminis and Bipolaris sorokiniana.
HH Felle, A Herrmann, P Schäfer, R Hückelhoven, KH Kogel;
Journal of plant physiology 165 (1), 52-59, 2008.
https://doi.org/10.1016/j.jplph.2007.08.006
Systemic and local modulation of plant responses by Piriformospora indica and related Sebacinales species.
F Waller, K Mukherjee, SD Deshmukh, B Achatz, M Sharma, P Schäfer, KH Kogel;
Journal of plant physiology 165 (1), 60-70, 2008.
https://doi.org/10.1016/j.jplph.2007.05.017
2007
Root cell death and systemic effects of Piriformospora indica: a study on mutualism.
P Schäfer, B Khatabi, KH Kogel;
FEMS microbiology letters 275 (1), 1-7, 2007.
https://doi.org/10.1111/j.1574-6968.2007.00848.x
2006
The root endophytic fungus Piriformospora indica requires host cell death for proliferation during mutualistic symbiosis with barley.
S Deshmukh, R Hückelhoven, P Schäfer, J Imani, M Sharma, M Weiss, F Waller, KH Kogel;
Proceedings of the National Academy of Sciences 103 (49), 18450-18457, 2006.
https://doi.org/10.1073/pnas.060569710
Report on the Annual Meeting of the Working Group Host-Parasite Interactions.
HB Deising, D Nowara, P Schweizer, D Douchkov, U Zierold, A Himmelbach, C Masur, L Jouanin, N Schlaich, C Richter, D Prüfer, BM Moerschbacher, M Koch, S Vorwerk, G Sharifi-Sirchi, N Olivieri, NL Schlaich, J Preuss, H Schultheiss, KH Kogel, R Hückelhoven... SD Deshmukh, P Schäfer, J Imani, F Waller… et al.;
Journal of Plant Diseases and Protection 113 (3), 135-142, 2006.
https://www.jstor.org/stable/43228856
Macroarray expression analysis of barley susceptibility and nonhost resistance to Blumeria graminis.
R Eichmann, S Biemelt, P Schäfer, U Scholz, C Jansen, A Felk, W Schäfer, G Langen, U Sonnewald, KH Kogel, R Hückelhoven;
Journal of plant physiology 163 (6), 657-670, 2006.
https://doi.org/10.1016/j.jplph.2005.06.019
Molekulare Analyse der durch den Wurzelendophyten Piriformospora indica hervorgerufenen Ertragsanstieg und Pathogenresistenz in Gerste.
F Waller, B Achatz, P Schafer, S Deshmukh, H Baltruschat, P Franken, KH Kogel;
MITTEILUNGEN-BIOLOGISCHEN BUNDESANSTALT FUR LAND UND FORSTWIRTSCHAFT 400, 258, 2006.
https://docplayer.org/44040618-Mitteilungen-aus-der-biologischen-bundesanstalt-fuer-land-und-forstwirtschaft-berlin-dahlem.html
Biotechnology in Cereals: Quo Vadis?
KH Kogel, J Imani, R Huckelhoven, C Jansen, G Langen, H Baltruschat, F Waller, P Schafer, B Altincicek, A Vilcinskas;
MITTEILUNGEN-BIOLOGISCHEN BUNDESANSTALT FUR LAND UND FORSTWIRTSCHAFT 400, 354, 2006.
https://docplayer.org/44040618-Mitteilungen-aus-der-biologischen-bundesanstalt-fuer-land-und-forstwirtschaft-berlin-dahlem.html
Deshmukh, S.D., Schäfer, P., Imani, J., Waller, F., Hückelhoven, R., Kogel, K.-H. (2006). Mutualistic Piriformospora indica requires host cell death for proliferation in barley roots. Journal of Plant Diseases and Protection 113: 141.
Schäfer, P.1, Jain, S.K.1, Delineau, M., Hückelhoven, R., Kogel, K.-H. (2006). Cytological analysis of organ-specific resistance responses to Bipolaris sorokiniana in oat. In: Modern Fungicides and Antifungal Compounds IV. H.W. Dehne, U. Gisis, K.H. Kuck, P.E. Russell, and H. Lyr (eds.). The British Crop Production Council, Alton, Hampshire, UK, p. 183-192. (1Both authors contributed equally)
2005
Model wheat genotypes as tools to uncover effective defense mechanisms against the hemibiotrophic fungus Bipolaris sorokiniana.
AE Ibeagha, R Hückelhoven, P Schäfer, DP Singh, KH Kogel;
Phytopathology 95 (5), 528-532, 2005.
https://doi.org/10.1094/PHYTO-95-0528
2004
The White Barley Mutant Albostrians Shows a Supersusceptible but Symptomless Interaction Phenotype with the Hemibiotrophic Fungus Bipolaris sorokiniana.
P Schäfer, R Hückelhoven, KH Kogel;
Molecular plant-microbe interactions 17 (4), 366-373, 2004.
https://doi.org/10.1094/MPMI.2004.17.4.366
2003
Cytological and Molecular Investigations of Cereal Resistance Mechanisms Against the Hemibiotrophic Pathogen Bipolaris Sorokiniana (Teleomorph: Cochliobolus Sativus). P Schäfer; PhD diss., 2003
Bipolaris sorokiniana on cereals: a new model for molecular work on hemibiotrophy. P Schafer, R Huckelhoven, G Langen, J Kumar, KH Kogel; PLANT PROTECTION SCIENCE-PRAGUE- 38, 245-245, 2003.
2002
Bipolaris sorokiniana, a cereal pathogen of global concern: cytological and molecular approaches towards better control.
J Kumar, P Schäfer, R Hückelhoven, G Langen, H Baltruschat, E Stein, S Nagarajan, KH Kogel;
Molecular plant pathology 3 (4), 185-195, 2002.
https://doi.org/10.1046/j.1364-3703.2002.00120.x
Schäfer, P., Kogel, K.-H. (2002). Bipolaris sorokiniana – Zytologische Untersuchungen als Basis zur Identifizierung von Resistenzmechanismen in Getreide. 53. Pflanzenschutztagung in Bonn, 16.-19.09.2002, Parey Buchverlag Berlin.
Schäfer, P., Hückelhoven, R., Langen, G., Kumar, J., K.-H. Kogel (2002). Bipolaris sorokiniana on cereals: A new model for molecular work on hemibiotrophy. Plant Protection Science 38: 245.