Publications
Pre-prints in Begutachtung
- Kuś, K., Carrique, L., Kecman, T., Fournier, M., Hassanein, S.S., Aydin, E., Kilchert, C., Grimes, J.M., Vasiljeva, L. (2023) “DSIF factor Spt5 coordinates transcription, maturation and exoribonucleolysis of RNA polymerase II transcripts.” bioRxiv, 10.16.562519.
DOI: 10.1101/2023.10.16.562519 – provisionally accepted in Nat. Commun.
Articles
- Aydin, E., Böhme, J., Keil, B., Schreiner, S., Žunar, B., Glatter, T., Kilchert, C. (2024) “DEAD-box ATPase Dbp2 is the key enzyme in an mRNP assembly checkpoint at the 3’-end of genes and involved in the recycling of cleavage factors.” Nat. Commun. 15(1):1–20.
DOI: 10.1038/s41467-024-51035-z - Kilchert, C. (2022) “RNA-protein interactomics” in “Protein Interactions: The Molecular Basis of Interactomics”, Eds. Volkhard Helms & Olga Kalinina, Wiley-VCH, ISBN: 978-3-527-34864-0
DOI: 10.1002/9783527830503.ch12 - Birot, A., Kus, K., Priest, E., Alwash, A. Al, Castello, A., Mohammed, S., Vasiljeva, L. and Kilchert, C. (2021) RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response. Life Sci. Alliance, 5, e202101111.
DOI: 10.26508/lsa.202101111 - Kilchert, C., Kecman, T., Priest, E., Hester, S., Aydin, E., Kus, K., Rossbach, O., Castello, A., Mohammed, S., Vasiljeva, L. (2020) “System-wide analyses of the fission yeast poly(A)+RNA interactome reveal insights into organization and function of RNA-protein complexes.” Genome Res. 30(7):1012–1026.
DOI: 10.1101/gr.257006.119 - Kilchert, C. (2020) “RNA exosomes and their co-factors.” Methods Mol Biol. 2062:215-235.
DOI 10.1007/978-1-4939-9822-7_11 - Kilchert, C. Hester, S., Castello, A., Mohammed, S., Vasiljeva, L. (2020) “Comparative poly(A)+ RNA interactome capture of RNA surveillance mutants.” Methods Mol Biol. 2062:255-276.
DOI: 10.1007/978-1-4939-9822-7_13 - Kilchert, C., Sträßer, K., Kunetsky, V., Änkö, M.L. (2019) “From parts lists to functional significance—RNA–protein interactions in gene regulation.” Wiley Interdiscip Rev RNA:e1582. - Review
DOI: 10.1002/wrna.1582 - Watts, B.R., Wittmann, S., Wery, M., Gautier, C., Kus, K., Birot, A., Heo, D.H., Kilchert, C., Morillon, A., Vasiljeva, L. (2018) “Histone deacetylation promotes transcriptional silencing at facultative heterochromatin.” Nucleic Acids Res. 46(11):5426-5440.
DOI: 10.1093/nar/gky232 - Wittmann, S., Renner, M., Watts, B., Adams, O., Huseyin, M., Baejen, C., El Omari, Kilchert, C., Heo, D.H., Kecman, T., Cramer, P., Grimes, J., Vasiljeva, L. (2017) “The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA” Nat Commun. 8:14861.
DOI: 10.1038/ncomms14861 - Kilchert, C., Wittmann, S., Vasiljeva, L. (2016) “The regulation and functions of the nuclear RNA exosome complex” Nat Rev Mol Cell Biol. 17(4):227-39. - Review
DOI: 10.1038/nrm.2015.15 - Kilchert, C., Wittmann, S., Passoni, M., Shah, S., Granneman,. S., Vasiljeva, L. (2015) “Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1” Cell Rep. 13(11):2504-15.
DOI: 10.1016/j.celrep.2015.11.026 - Shah, S., Wittmann, S.*, Kilchert, C.*, Vasiljeva, L. (2014) “lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast” Genes Dev. 28(3):231-44. *These authors contributed equally
DOI: 10.1101/gad.230177.113 - Kilchert, C., Vasiljeva, L. (2013) “mRNA quality control goes transcriptional” Biochem Soc Trans. 41(6):1666-72. - Review
DOI: 10.1042/BST20130202 - Volanakis, A., Passoni, M., Hector R.D., Shah, S., Kilchert, C., Granneman, S., Vasiljeva, L. (2013) “Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast” Genes Dev. 27(18):2025-38.
DOI: 10.1101/gad.221960.113 - Kilchert, C., Spang, A. (2011) „ Cotranslational transport of ABP140 mRNA to the distal pole of S. cerevisiae.” EMBO J. 30(17):3567-80.
DOI: 10.1038/emboj.2011.247
Commented on in: Yoo, S., Twiss, J.L. (2011) “The road not taken: New destinations for yeast mRNAs on the move.” EMBO J. 30(17):3564–3566. - Kilchert, C., Weidner, J., Prescianotto-Baschong, C., Spang, A. (2010) „Defects in the secretory pathway and high Ca2+ induce multiple P-bodies.” Mol Biol Cell. 21(15):2624-38.
DOI: 10.1091/mbc.e10-02-0099 -
Kamena, F., Diefenbacher, M., Kilchert, C., Schwarz, H., Spang, A. (2008) „Ypt1p is essential for retrograde Golgi-ER transport and for Golgi maintenance in S. cerevisiae.” J. Cell Sci. 121(8):1293-302.
DOI: 10.1242/jcs.016998