Inhaltspezifische Aktionen


Philipp N, Brinkmann CK, Georg J, Schindler D, Berghoff BA. DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. Bioinformatics. 2023 Apr 22:btad285. doi: 10.1093/bioinformatics/btad285. Epub ahead of print. PMID: 37086442.

Köbel TS, Melo Palhares R, Fromm C, Szymanski W, Angelidou G, Glatter T, Georg J, Berghoff BA, Schindler D. An Easy-to-Use Plasmid Toolset for Efficient Generation and Benchmarking of Synthetic Small RNAs in Bacteria. ACS Synth Biol. 2022 Aug 31. doi: 10.1021/acssynbio.2c00164. Epub ahead of print. PMID: 36044590.

Edelmann D, Berghoff BA. A Shift in Perspective: A Role for the Type I Toxin TisB as Persistence-Stabilizing Factor. Front Microbiol. 2022 Mar 17;13:871699. doi: 10.3389/fmicb.2022.871699. PMID: 35369430; PMCID: PMC8969498.

Berghoff BA (2021) Analyzing Persister Proteomes with SILAC and Label-Free Methods. Methods Mol Biol 2357: 149-159.

Edelmann D, Leinberger FH, Schmid NE, Oberpaul M, Schäberle TF, Berghoff BA (2021) Elevated Expression of Toxin TisB Protects Persister Cells against Ciprofloxacin but Enhances Susceptibility to Mitomycin C. Microorganisms 9: 943.

Edelmann D, Oberpaul M, Schäberle TF, Berghoff BA (2021) Post-transcriptional deregulation of the tisB/istR-1 toxin-antitoxin system promotes SOS-independent persister formation in Escherichia coli. Environ Microbiol Rep 13: 159-168.

Li S, Edelmann D, Berghoff BA, Georg J, Evguenieva-Hackenberg E. Bioinformatic prediction reveals posttranscriptional regulation of the chromosomal replication initiator gene dnaA by the attenuator sRNA rnTrpL in Escherichia coli. RNA Biol. 2021 Sep;18(9):1324-1338. doi: 10.1080/15476286.2020.1846388. Epub 2020 Nov 19. PMID: 33164661; PMCID: PMC8354599

Licht MK, Nuss AM, Volk M, Konzer A, Beckstette M, Berghoff BA, Klug G. (2020) Adaptation to Photooxidative Stress: Common and Special Strategies of the Alphaproteobacteria Rhodobacter sphaeroides and Rhodobacter capsulatus. Microorganisms. 2020 Feb 19;8(2). pii: E283. doi: 10.3390/microorganisms8020283.

Berghoff BA, Wagner EGH (2019) Persister formation driven by TisB-dependent membrane depolarization. In: Persister Cells and Infectious Disease; Lewis K (Ed.), Springer International Publishing

Edelmann D, Berghoff BA. (2019) Type I toxin-dependent generation of superoxide affects the persister life cycle of Escherichia coli. Sci Rep. 2019 Oct 3;9(1):14256. doi: 10.1038/s41598-019-50668-1.

Spanka DT, Konzer A, Edelmann D, Berghoff BA (2019) High-Throughput Proteomics Identifies Proteins With Importance to Postantibiotic Recovery in Depolarized Persister Cells. Front. Microbiol., 06 March 2019 March 06; doi: 10.3389/fmicb.2019.00378

Berghoff BA, Karlsson T, Källman T, Wagner EGH, Grabherr MG (2017) RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study. BioData Min. 2017 Sep 5;10:30. doi: 10.1186/s13040-017-0150-8. eCollection 2017.

Berghoff BA, Wagner EGH (2017) RNA-based regulation in type I toxin-antitoxin systems and its implication for bacterial persistence. Curr Genet. 2017 Dec;63(6):1011-1016. doi: 10.1007/s00294-017-0710-y. Epub 2017 May 30. Review.

Berghoff BA, Hoekzema M, Aulbach L, Wagner EG (2017) Two regulatory RNA elements affect TisB-dependent depolarization and persister formation. Mol Microbiol. Epub 2016 Dec 20. doi: 10.1111/mmi.13607.

Müller KM, Berghoff BA, Eisenhardt BD, Remes B, Klug G (2016) Characteristics of Pos19 - A Small Coding RNA in the Oxidative Stress Response of Rhodobacter sphaeroides. PLoS One 11: e0163425

Berghoff BA, Klug G (2016) An "omics" view on the response to singlet oxygen. In: Stress and Environmental Control of Gene Expression in Bacteria; de Bruijn FJ (Ed.), Volume 1, Wiley-Blackwell Publishers

Peng T, Berghoff BA, Oh JI, Weber L, Schirmer J, Schwarz J, Glaeser J, Klug G (2016) Regulation of a polyamine transporter by the conserved 3' UTR-derived sRNA SorX confers resistance to singlet oxygen and organic hydroperoxides in Rhodobacter sphaeroides. RNA Biol 13: 988-99

Billenkamp F, Peng T, Berghoff BA, Klug G (2015) A cluster of four homologous small RNAs modulates C1 metabolism and the pyruvate dehydrogenase complex in Rhodobacter sphaeroides under various stress conditions. J Bacteriol 197: 1839-52

Remes B, Berghoff BA, Förstner KU, Klug G (2014) Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides. BMC Genomics 15: 794

Glaeser SP, Berghoff BA, Stratmann V, Grossart HP, Glaeser J (2014) Contrasting effects of singlet oxygen and hydrogen peroxide on bacterial community composition in a humic lake. PLoS One 9: e92518

Hess WR, Berghoff BA, Wilde A, Steglich C, Klug G (2014) Riboregulators and the role of Hfq in photosynthetic bacteria. RNA Biol 11: 413-26

Nuss AM, Adnan F, Weber L, Berghoff BA, Glaeser J, Klug G (2013) DegS and RseP homologous proteases are involved in singlet oxygen dependent activation of RpoE in Rhodobacter sphaeroides. PLoS One 8: e79520

Berghoff BA, Konzer A, Mank NN, Looso M, Rische T, Förstner KU, Krüger M, Klug G (2013) Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses. PLoS Genet 9: e1003576

Mank NN, Berghoff BA, Klug G (2013) A mixed incoherent feed-forward loop contributes to the regulation of bacterial photosynthesis genes. RNA Biol 10: 347-52

Mank NN, Berghoff BA, Hermanns YN, Klug G (2012) Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. Proc Natl Acad Sci USA 109: 16306-11

Berghoff BA (2012) Licht und Sauerstoff: wie Bakterien auf photooxidativen Stress reagieren. Karriere, Köpfe & Konzepte, BIOspektrum 18: 340-40

Berghoff BA, Glaeser J, Sharma CM, Zobawa M, Lottspeich F, Vogel J, Klug G (2011) Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides. Mol Microbiol 80: 1479-95

Berghoff BA, Klug G (2011) Small RNAs with a role in the oxidative stress response of bacteria. In: Regulatory RNAs in Prokaryotes; Marchfelder A, Hess W (Eds.), 1st Edition, Springer, Wien, New York

Berghoff BA, Glaeser J, Nuss AM, Zobawa M, Lottspeich F, Klug G (2011) Anoxygenic photosynthesis and photooxidative stress: a particular challenge for Roseobacter. Environ Microbiol 13: 775-91

Glaeser J, Nuss AM, Berghoff BA, Klug G (2011) Singlet oxygen stress in microorganisms. Adv Microb Physiol 58: 141-73

Nuss AM, Glaeser J, Berghoff BA, Klug G (2010) Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides. J Bacteriol 192: 2613-23

Berghoff BA, Glaeser J, Sharma CM, Vogel J, Klug G (2009) Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol Microbiol 74: 1497-512