Resources
- Find out whether your favourite protein shows RNA-dependent behaviour on the interactive web interface to our budding and fission yeast R-DeeP data:
https://yeast-r-deep.computational.bio/
If there are bugs, let us know.
Here's the link to the pre-print. - Find ImageJ macro scripts that we use for image quantitation on our GitHub repository.
Currently contains scripts for quantitation of nuclear export (oligo-dT FISH) and segmentation of mixed cultures based on NLS-BFP marker as used in Aydin et al., 2024.
In it's infancy, but will grow over time. - BSgenome data package for the S. pombe genome assembly ASM294v2 kindly provided by Christian Haering and Christoph Schiklenk - download here.
If you use it, please cite their publication:
Schiklenk et al. (2018) "Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1"
Journal of Cell Biology, 217(7): 2383–2401